PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_F36D340F4.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 1123aa    MW: 125232 Da    PI: 6.5906
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_F36D340F4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.16.9e-23122223199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+
  Traes_7AL_F36D340F4.1 122 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVI 207
                            99*****************************954.4444.48********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++++l+++++r+
  Traes_7AL_F36D340F4.1 208 FV--RDERQQLLLGIRRA 223
                            **..4577788***9997 PP

2Auxin_resp117.89.1e-39248331183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g++dldpvrW+nS+Wr+L+
  Traes_7AL_F36D340F4.1 248 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 331
                            79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-42111251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-41114237IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-19121213No hitNo description
PROSITE profilePS5086311.899122224IPR003340B3 DNA binding domain
SMARTSM010197.4E-23122224IPR003340B3 DNA binding domain
PfamPF023627.3E-21122223IPR003340B3 DNA binding domain
PfamPF065072.3E-33248331IPR010525Auxin response factor
PfamPF023092.9E-109871074IPR033389AUX/IAA domain
PROSITE profilePS5174527.5299891073IPR000270PB1 domain
SuperFamilySSF542773.53E-710041068No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1123 aa     Download sequence    Send to blast
MAATGAGREK KAPAINSDLW HACAGPLVQL PPAGSLVVYF PQGHSEQVAA SMQKDVDAHV  60
PNYPNLPSKL ICLLHNITLH ADLETDEVYA QMTLQPVTSY GKEALQLSEL ALKQARPQNE  120
FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ EIQARDLHDN VWTFRHIYRG  180
QPKRHLLTTG WSLFVSGKRL FAGDSVIFVR DERQQLLLGI RRANRQPTNI SSSVLSSDSM  240
HIGILAAAAH AAANNSPFTI FYNPRASPTE FVIPFAKYQK AVYGNQLSLG MRFRMMFETE  300
ELGTRRYMGT ITGINDLDPV RWKNSQWRNL QVGWDESAAG ERRNRVSIWE IEPVAAPFFI  360
CPPPFFGAKR PRQLDDESSE MENLLKRAMP WLGEEICIKD PQTQNTIMPG LSLVQWMNMN  420
MQQSSSFANT AMQSEYLRSI TNPSMQNIGS GDLSRQLCLQ NQLLQQNNMQ FNTPKLPQQM  480
QPNNELSKAA LPLNQNGASI KPEEQTQDTS NFQRQQQSMN YTLPLSQAQT SLAQAQVLPL  540
LSHQQQQHHH QQHQHQQQEQ QHQQQQQQKF LQQQQLLLQQ QQLQQHQHQL QQQQQQQLGK  600
MPAQLPNLSN QQLQLSDQQL QLQLLQKLQQ QQQSLLSQPG VTLAQLPLIQ EQQKLLMDMQ  660
QQLSSSHSLS QQQMMPQQST KIPSQAASLP PPMQPDTTHQ KLPQKQALPA DTLEAAIPTT  720
TSHKFSSANG SPLRMPGATH SVVTEEIPSC STSPSTANGN HLLQPVPGRD QYSSMINTEK  780
APHSTAPMSV PSSLDAVTGA QRMTKELPKL NSNVKQNMMP SKLLNGGAGP QNFANNAAPT  840
DYLETASSAT SVWLSQADGL LHPNFPMTNF SQQQLFKDAP PDTEIPAEIP SNNALFGISN  900
DGHVGFPMVT DDFLTNGIDA VKYENHISTD IDNNYRIPKD AQQEISSSMV SQSFGASDMA  960
FNSIDSGIND GAFLNKSSWP PAPPVKRMRT FTKVYKRGAV GRSIDISQYA GYEELKHALA  1020
QMFSIEGQLE ERQRIGWKLV YRDHEDDILL LGDDPWEEFV NCVKCIRILS PQEVQQMSLD  1080
GDLGSSVVPN QACSSSEGGG NAWRARCDQN SGNPSTGSYD QFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1681135247388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674960.0AK367496.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2058D09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563519.10.0PREDICTED: auxin response factor 19-like
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLW5HBY70.0W5HBY7_WHEAT; Auxin response factor
STRINGBRADI1G34340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]